PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G16310.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 302aa    MW: 33733.9 Da    PI: 9.3015
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G16310.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18142229196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k++++s+v++  +l lp +f++ h  + +++++++lede+g +++  +   +++ +  l++GW++F+  ++L++gD++vF+l++ ++f  ++
  LPERR05G16310.2 142 FVKTMVRSHVSSCFWLGLPTRFCKLHL-P-PREFKMVLEDEEGGEFDSVY--IGNRTG--LSGGWRGFAMHKNLEDGDSLVFELVEPDRF--KI 227
                      89*********************8774.4.4779****************..555444..***********************9987777..55 PP

                      EE CS
               B3  95 kv 96 
                       +
  LPERR05G16310.2 228 YI 229
                      55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-21134232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-24135231IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-27140231No hitNo description
PfamPF023622.5E-17142230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266142233IPR003340B3 DNA binding domain
SMARTSM010192.1E-23142233IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MVRRRGGGGS VAAEAAGEAS GAAYEEERRK RVLENLKHLE DLGISKMSKS LLEAARLQKT  60
TRASPKPRKK FEATEVRRSS RARNSVSLNV IDYLVVLNRG GSRNTEQGRD YTGRIASYEQ  120
QQRAYKRAER IQNSLDPENP SFVKTMVRSH VSSCFWLGLP TRFCKLHLPP REFKMVLEDE  180
EGGEFDSVYI GNRTGLSGGW RGFAMHKNLE DGDSLVFELV EPDRFKIYII KAADEDVNES  240
EPVDEEADGD KKDTDTKDAV EQDDSPNAEP LKGAKRRKLC GRRSCLAFSS KAGSLTKKSA  300
SP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270276LKGAKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687050.0AK068705.1 Oryza sativa Japonica Group cDNA clone:J013160D16, full insert sequence.
GenBankHQ8588770.0HQ858877.1 Oryza sativa Japonica Group isolate UT1755 ABIVP1 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639491.11e-157PREDICTED: B3 domain-containing protein Os05g0481400 isoform X2
SwissprotQ5KQI41e-159Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A0D9WHT20.0A0A0D9WHT2_9ORYZ; Uncharacterized protein
STRINGBGIOSGA017853-PA1e-157(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-41B3 family protein